This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MD60.1

Display Name: Tunisia/LOC_000MD60.1/2018-04-27
C. Badr & I. Larbi

Sample details

Collection date
2018-04-27
Collection date (lower bound)
2018-04-27
Collection date (upper bound)
2018-04-27
Earliest release date
2025-10-24
Collection country
Tunisia
Isolate name
353/2018

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-05 17:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institut Pasteur de Tunis, Labortory of Epidemiology and Veterinary Microbiology

INSDC

NCBI release date
2025-10-24
NCBI update date
2025-10-24
INSDC accession

Host

Host taxon id
Host name scientific
Equus caballus

Alignment and QC metrics

Length
435
Total SNPs
16
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Frame shifts
[]
Completeness
3.94%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
PQ215116.1
Submitting group
Date submitted
2025-12-05 17:40:35 UTC
Date released
2025-12-05 18:05:53 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C1422T
  • G1441A
  • A1446G
  • C1465T
  • C1470T
  • C1484T
  • G1521A
  • A1527C
  • A1542G
  • A1566C
  • C1599T
  • T1681C
  • C1707T
  • G1710A
  • T1776C
  • T1788C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    env

  • env:V159I
  • env:L167F
  • env:A173V
    • Deletions
    None
    Insertions
    None

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