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LOC_000MAWN.1
Download
Download FASTA
Download metadata TSV
USA/30195/2021-01-01
C. A. Mariskanish,
T. Hallum,
S. S. Lee,
M. A. Conte &
J. Hang
Walter Reed Army Institute of Research, Viral Diseases Program
Sample details
Collection date
2021
Earliest release date
2024-12-23
Sampling location
USA (San Gabriel Valley, California)
Isolate name
30195
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-10 12:19
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-12-23
NCBI update date
2024-12-23
INSDC accession
PQ005987.1
Host
Host
song birds (Passeriformes)
Submission details
Submission ID
PQ005987.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-10 12:19:13 UTC
Date released
2026-06-10 12:39:27 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000MAWN.1.embl
Alignment and QC
Total SNPs
129
Total unknown nucs
35
Length
10365 (93.7%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS1:
I
122
V
NS1:
V
135
I
NS1:
I
236
V
NS2A:
R
122
H
NS2A:
R
188
K
NS2B:
A
103
V
NS2B:
V
120
I
NS3:
T
249
P
NS3:
I
356
T
NS3:
S
467
L
NS4B:
M
29
L
NS5:
R
44
S
NS5:
V
49
L
NS5:
K
177
R
NS5:
H
684
Y
NS5:
R
693
H
capsid:
K
104
R
Show more
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
204
T
C
340
T
A
407
G
C
435
T
C
531
T
A
564
G
A
630
G
C
663
T
C
807
T
T
861
A
C
882
T
C
933
T
T
940
C
C
966
T
C
969
T
A
988
T
C
1065
T
C
1089
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS1
NS1:
I
122
V
NS1:
V
135
I
NS1:
I
236
V
NS2A
NS2A:
R
122
H
NS2A:
R
188
K
NS2B
NS2B:
V
120
I
NS3
NS3:
S
467
L
NS4A
NS4A:
A
85
V
NS4B
NS4B:
M
29
L
NS5
NS5:
R
44
S
NS5:
V
49
L
NS5:
H
684
Y
NS5:
R
693
H
capsid
capsid:
K
104
R
env
env:
N
8
Y
env:
V
159
A
env:
L
167
F
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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