This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LXV5.1

USA/UNMC0716/2023-08-30
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2023-08-30
Earliest release date
2025-09-03
Sampling location
USA (Nebraska; Holt)
Isolate name
UNMC0716

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 17:57insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-03
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ310075.1
Submitting group
Date submitted
2026-03-10 17:57:25 UTC
Date released
2026-03-10 18:18:22 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
108
Length
10260 (93%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:G233S
  • NS2A:L38M
  • NS2A:R188K
  • NS2B:A103V
  • NS3:A177V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:E14D
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • env:D348N
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C385A
  • C423T
  • C435T
  • A630G
  • G753T
  • G756A
  • C762T
  • C1329T
  • T1442C
  • C1465T
  • C1470T
  • G1662A
  • C1707T
  • C1750T
  • G2008A
  • C2109T
  • A2208G
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:G233S

NS2A

  • NS2A:L38M
  • NS2A:R188K

NS3

  • NS3:A177V

NS5

  • NS5:E14D

env

  • env:V159A
  • env:L167F
  • env:D348N
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue