This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LV0Y.1

France/LOC_000LV0Y.1/2012-10-09
L. Josset, I. Schuffenecker & B. Lina

Centre National de Reference des Enterovirus et Parechovirus, Hospices Civils de Lyon

Sample details

Collection date
2012-10-09
Earliest release date
2017-11-29
Sampling location
France (Lyon)
Isolate name
12-41-244

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2017-11-29
NCBI update date
2017-11-29
INSDC accession

Host

Host

Submission details

Submission ID
KY272899.1
Submitting group
Date submitted
2026-07-17 10:32:30 UTC
Date released
2026-07-17 10:38:28 UTC

Clade

Clade EV-D68
B2

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
110
Total ambiguous nucs
3
Length
932 (12.6%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions
  • G2463A
  • C2493T
  • T2499C
  • C2500T
  • T2517A
  • T2520A
  • T2526C
  • C2529T
  • A2568G
  • G2586A
  • G2589C
  • G2595C
  • A2598G
  • T2613C
  • G2614A
  • G2619A
  • C2625T
  • C2626T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

2A

  • 2A:I22T
  • 2A:R25K

VP1

  • VP1:G76S
  • VP1:K84R
  • VP1:N90D
  • VP1:A92T
  • VP1:S95A
  • VP1:G97Q
  • VP1:H99D
  • VP1:K110R
  • VP1:N142S
  • VP1:N143S
  • VP1:D144N
  • VP1:S145N
  • VP1:M148V
  • VP1:K168E
  • VP1:E169K
  • VP1:N218S
  • VP1:M269L
  • VP1:R282K
Deletions
N/A
Insertions
N/A

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