This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LUZ0.1

France/LOC_000LUZ0.1/2012-10-06
L. Josset, I. Schuffenecker & B. Lina

Centre National de Reference des Enterovirus et Parechovirus, Hospices Civils de Lyon

Sample details

Collection date
2012-10-06
Earliest release date
2017-11-29
Sampling location
France (Lyon)
Isolate name
12-40-533

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2017-11-29
NCBI update date
2017-11-29
INSDC accession

Host

Host

Submission details

Submission ID
KY272896.1
Submitting group
Date submitted
2026-07-17 10:32:30 UTC
Date released
2026-07-17 10:38:28 UTC

Clade

Clade EV-D68
A1

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
104
Total deleted nucs
3
Total ambiguous nucs
3
Length
811 (11%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions
  • G2589T
  • G2614A
  • C2626T
  • G2631A
  • A2639G
  • T2643C
  • T2646C
  • A2649G
  • G2655A
  • T2661C
  • C2670T
  • A2671G
  • G2672A
  • C2673G
  • G2677C
  • G2678A
  • G2679A
  • C2683G
Deletions
2806-2808
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

2A

  • 2A:I22T

VP1

  • VP1:G76S
  • VP1:K84R
  • VP1:S95E
  • VP1:G97Q
  • VP1:H99D
  • VP1:I131V
  • VP1:N140S
  • VP1:G141S
  • VP1:N142S
  • VP1:M148T
  • VP1:K168E
  • VP1:E169K
  • VP1:G178A
  • VP1:N218S
  • VP1:V243I
  • VP1:M269L
  • VP1:K280R
  • VP1:R282K
Deletions

VP1

VP1:144
Insertions
N/A

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