This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LUY2.1

France/LOC_000LUY2.1/2012-09-28
L. Josset, I. Schuffenecker & B. Lina

Centre National de Reference des Enterovirus et Parechovirus, Hospices Civils de Lyon

Sample details

Collection date
2012-09-28
Earliest release date
2017-11-29
Sampling location
France (Lyon)
Isolate name
12-39-588

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2017-11-29
NCBI update date
2017-11-29
INSDC accession

Host

Host

Submission details

Submission ID
KY272891.1
Submitting group
Date submitted
2026-07-17 10:32:30 UTC
Date released
2026-07-17 10:38:28 UTC

Clade

Clade EV-D68
A1

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
128
Total deleted nucs
3
Total ambiguous nucs
1
Length
999 (13.6%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions
  • A2392G
  • G2405C
  • T2421C
  • G2425A
  • G2427T
  • T2433C
  • T2454C
  • G2460A
  • G2463A
  • T2466C
  • C2478T
  • A2481G
  • T2499C
  • C2500T
  • T2517G
  • T2520C
  • C2525G
  • C2529T
Deletions
2818-2820
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

2A

  • 2A:I22T

VP1

  • VP1:N2D
  • VP1:G6A
  • VP1:V13I
  • VP1:T46S
  • VP1:G76S
  • VP1:K84R
  • VP1:S95E
  • VP1:G97Q
  • VP1:H99D
  • VP1:I131V
  • VP1:N140S
  • VP1:G141S
  • VP1:N142S
  • VP1:M148T
  • VP1:K168E
  • VP1:E169K
  • VP1:G178A
  • VP1:N218S
Deletions

VP1

VP1:144
Insertions
N/A

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