This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000HDJH.1

USA/LOC_000HDJH.1/2007-08-07
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

J. Craig Venter Institute

Sample details

Collection date
2007-08-07
Earliest release date
2016-08-02
Sampling location
USA (Westchester Co., NY)
Isolate name
WNV-1/Culex/USA/07590273/2007

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-10 12:19insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KX547231.1
Submitting group
Date submitted
2026-06-10 12:19:02 UTC
Date released
2026-06-10 12:35:38 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
45
Length
10787 (97.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:N158S
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • env:L312I
  • prM:V19I
  • prM:S147N
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G520A
  • A630G
  • C660T
  • G905A
  • T1083C
  • T1442C
  • T1443C
  • C1465T
  • C1900A
  • T2289C
  • C2406T
  • T2439C
  • C2466T
  • T2607C
  • T3160C
  • C4107T
  • C4132T
  • A4146G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:N158S

NS4B

  • NS4B:I240M

env

  • env:V159A
  • env:L167F
  • env:L312I

prM

  • prM:V19I
  • prM:S147N
Deletions
N/A
Insertions
N/A

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