This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000HD92.1

USA/LOC_000HD92.1/2012-07-06
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

J. Craig Venter Institute

Sample details

Collection date
2012-07-06
Earliest release date
2016-08-02
Sampling location
USA (Nassau Co., NY)
Isolate name
WNV-1/Aedes sp./USA/12290273/2012

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KX547222.1
Submitting group
Date submitted
2026-07-22 16:49:42 UTC
Date released
2026-07-22 17:08:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
74
Total deleted nucs
1
Length
10786 (97.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:A103V
  • NS2B:V120I
  • NS3:K14R
  • NS3:T249P
  • NS3:I356T
  • NS3:I573V
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • NS5:V207I
  • capsid:K104R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C52T
  • C340T
  • A407G
  • C435T
  • C612T
  • A630G
  • C937T
  • C1170T
  • G1191A
  • C1227T
  • C1317T
  • T1442C
  • C1465T
  • G1662A
  • C1707T
  • C1750T
  • C2172T
  • C2304T
Deletions
10451
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS2B

  • NS2B:V120I

NS3

  • NS3:K14R
  • NS3:I573V

NS4B

  • NS4B:I240M

NS5

  • NS5:V207I

capsid

  • capsid:K104R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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