This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000HD84.1

Display Name: USA/LOC_000HD84.1/2014-09-23
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

Sample details

Collection date
2014-09-23
Collection date (lower bound)
2014-09-23
Collection date (upper bound)
2014-09-23
Earliest release date
2016-08-02
Collection country
USA
Collection subdivision level 1
Nassau Co., NY

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-05 17:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
J. Craig Venter Institute

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex

Alignment and QC metrics

Length
10787
Total SNPs
86
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Frame shifts
[]
Completeness
97.81%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
KX547221.1
Submitting group
Date submitted
2025-12-05 17:40:24 UTC
Date released
2025-12-05 17:57:12 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • T615C
  • A630G
  • T932C
  • A1425G
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • C2109T
  • C2172T
  • T2190C
  • C2304T
  • C2466T
  • G3150A
  • G3301A
  • C3501T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:D278N

    • NS2A

  • NS2A:M90L
  • NS2A:R188K

    • NS2B

  • NS2B:S64N

    • NS4B

  • NS4B:G104E
  • NS4B:I240M

    • NS5

  • NS5:H295Y

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:V156A
    • Deletions
    None
    Insertions
    None

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