This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000HD84.1

USA/LOC_000HD84.1/2014-09-23
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

J. Craig Venter Institute

Sample details

Collection date
2014-09-23
Earliest release date
2016-08-02
Sampling location
USA (Nassau Co., NY)
Isolate name
WNV-1/Culex/USA/14290836/2014

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-10 12:19insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KX547221.1
Submitting group
Date submitted
2026-06-10 12:19:02 UTC
Date released
2026-06-10 12:35:38 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
86
Length
10787 (97.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:D278N
  • NS2A:M90L
  • NS2A:R188K
  • NS2B:S64N
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:G104E
  • NS4B:I240M
  • NS5:K177R
  • NS5:H295Y
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:V156A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • T615C
  • A630G
  • T932C
  • A1425G
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • C2109T
  • C2172T
  • T2190C
  • C2304T
  • C2466T
  • G3150A
  • G3301A
  • C3501T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:D278N

NS2A

  • NS2A:M90L
  • NS2A:R188K

NS2B

  • NS2B:S64N

NS4B

  • NS4B:G104E
  • NS4B:I240M

NS5

  • NS5:H295Y

env

  • env:V159A
  • env:L167F

prM

  • prM:V156A
Deletions
N/A
Insertions
N/A

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