This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000HCYQ.1

USA/LOC_000HCYQ.1/2006-09-11
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

J. Craig Venter Institute

Sample details

Collection date
2006-09-11
Earliest release date
2016-08-02
Sampling location
USA (Putnam Co., NY)
Isolate name
WNV-1/Corvus brachyrhynchos/USA/06VER01703/2006

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KX547211.1
Submitting group
Date submitted
2026-07-22 16:49:42 UTC
Date released
2026-07-22 17:08:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
51
Length
10787 (97.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:R339K
  • NS2A:L95F
  • NS2B:A103V
  • NS3:I162M
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85T
  • NS4B:S236A
  • NS5:K177R
  • NS5:K432R
  • capsid:S2F
  • env:V24I
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C101T
  • C205T
  • A630G
  • G1036A
  • T1407C
  • A1425G
  • T1442C
  • C1465T
  • T1923C
  • C2466T
  • C2529T
  • T2772C
  • C2778T
  • G3485A
  • C3762T
  • C3808T
  • A3939G
  • C4107T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:R339K

NS2A

  • NS2A:L95F

NS3

  • NS3:I162M

NS4A

  • NS4A:A85T

NS4B

  • NS4B:S236A

NS5

  • NS5:K432R

capsid

  • capsid:S2F

env

  • env:V24I
  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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