This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000HCXS.1

USA/LOC_000HCXS.1/2001-08-17
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

J. Craig Venter Institute

Sample details

Collection date
2001-08-17
Earliest release date
2016-08-02
Sampling location
USA (Nassau Co., NY)
Isolate name
WNV-1/Culex/USA/34010017/2001

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KX547210.1
Submitting group
Date submitted
2026-07-22 16:49:42 UTC
Date released
2026-07-22 17:08:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
16
Length
10787 (97.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:M90V
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:T61A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159V
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A543C
  • A630G
  • C1465T
  • A3793G
  • C4107T
  • T4692C
  • G5280A
  • T5475C
  • C5865T
  • A6267G
  • T6405C
  • C6996T
  • A7096G
  • T8235C
  • T9744C
  • C10338T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:M90V

NS4B

  • NS4B:T61A

env

  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue