This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000HCQ6.1

USA/LOC_000HCQ6.1/2001-10-04
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

J. Craig Venter Institute

Sample details

Collection date
2001-10-04
Earliest release date
2016-08-02
Sampling location
USA (Suffolk Co., NY)
Isolate name
WNV-1/Culex/USA/10020009/2001

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KX547203.1
Submitting group
Date submitted
2026-08-12 11:45:10 UTC
Date released
2026-08-12 12:01:37 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
24
Length
10787 (97.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:P296A
  • NS2A:I39T
  • NS2B:A103V
  • NS2B:V119I
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:L96F
  • NS4B:T165N
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159V
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A630G
  • C663T
  • C1465T
  • C3066T
  • C3355G
  • T3641C
  • C3810T
  • C4107T
  • G4573A
  • G5280A
  • G5868A
  • A6198G
  • T6405C
  • G6714A
  • C6726T
  • C7201T
  • C7409A
  • T7683C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:P296A

NS2A

  • NS2A:I39T

NS2B

  • NS2B:V119I

NS4B

  • NS4B:L96F
  • NS4B:T165N

env

  • env:L167F
Deletions
N/A
Insertions
N/A

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