This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000HCQ6.1

Display Name: USA/LOC_000HCQ6.1/2001-10-04
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

Sample details

Collection date
2001-10-04
Collection date (lower bound)
2001-10-04
Collection date (upper bound)
2001-10-04
Earliest release date
2016-08-02
Collection country
USA
Collection subdivision level 1
Suffolk Co., NY

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-05 17:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
J. Craig Venter Institute

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex

Alignment and QC metrics

Length
10787
Total SNPs
24
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Frame shifts
[]
Completeness
97.81%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
KX547203.1
Submitting group
Date submitted
2025-12-05 17:40:24 UTC
Date released
2025-12-05 17:57:12 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C663T
  • C1465T
  • C3066T
  • C3355G
  • T3641C
  • C3810T
  • C4107T
  • G4573A
  • G5280A
  • G5868A
  • A6198G
  • T6405C
  • G6714A
  • C6726T
  • C7201T
  • C7409A
  • T7683C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:P296A

    • NS2A

  • NS2A:I39T

    • NS2B

  • NS2B:V119I

    • NS4B

  • NS4B:L96F
  • NS4B:T165N

    • env

  • env:L167F
    • Deletions
    None
    Insertions
    None

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