This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000HC0M.1

Display Name: USA/LOC_000HC0M.1/2002-08-08
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

Sample details

Collection date
2002-08-08
Collection date (lower bound)
2002-08-08
Collection date (upper bound)
2002-08-08
Earliest release date
2016-08-02
Collection country
USA
Collection subdivision level 1
Richmond Co., NY

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
J. Craig Venter Institute

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Corvus brachyrhynchos

Alignment and QC metrics

Length
10787
Total SNPs
17
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
97.81%
Total stop codons
0

Submission details

Submission ID
KX547179.1
Submitting group
Date submitted
2025-11-10 18:59:55 UTC
Date released
2025-11-10 19:11:03 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C1465T
  • T1499A
  • C1974T
  • C3085T
  • C4107T
  • G4195A
  • A4257G
  • C4323T
  • G5280A
  • T6405C
  • C7182T
  • G7797A
  • T8235C
  • A8958G
  • T9954C
  • C10338T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:L206F

    • NS2A

  • NS2A:A224T

    • env

  • env:L167F
  • env:L178Q
    • Deletions
    None
    Insertions
    None

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