This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000HBVX.1

Display Name: USA/LOC_000HBVX.1/2013-07-16
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

Sample details

Collection date
2013-07-16
Collection date (lower bound)
2013-07-16
Collection date (upper bound)
2013-07-16
Earliest release date
2016-08-02
Collection country
USA
Collection subdivision level 1
Westchester Co., NY

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-05 17:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
J. Craig Venter Institute

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex

Alignment and QC metrics

Length
10787
Total SNPs
80
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Frame shifts
[]
Completeness
97.81%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
KX547174.1
Submitting group
Date submitted
2025-12-05 17:40:24 UTC
Date released
2025-12-05 17:55:55 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C672T
  • T946C
  • C1278T
  • A1401G
  • T1442C
  • C1465T
  • A1906G
  • T1965C
  • A2097C
  • A2310G
  • C2371T
  • T2394C
  • C2466T
  • T2475C
  • T3138C
  • C3504T
  • C3680T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:S334T

    • NS4B

  • NS4B:S14I

    • NS5

  • NS5:N791D

    • env

  • env:V159A
  • env:L167F
  • env:T314A
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue