This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0002787.1

China/LOC_0002787.1/1980
A. Moming, Q. Zhu, Y. Bai, J. Jin, Q. Wu, Z. Su, S. Tang, Y. Zhang, S. Shen & F. Deng

Wuhan Institute of Virology, Chinese Academy of Sciences

Sample details

Collection date
1980
Earliest release date
2023-08-21
Sampling location
China
Isolate name
BA8004

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-12 21:08insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-21
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
OR047175.1.L/OR047155.1.M/OR047135.1.S
Submitting group
Date submitted
2026-06-12 21:07:57 UTC
Date released
2026-06-12 21:12:21 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
229
Total inserted nucs S segment
116
Total deleted nucs S segment
45
Length S segment
1800 (95.7%)
Total SNPs L segment
1602
Total inserted nucs L segment
322
Length L segment
12430 (100%)
Total SNPs M segment
999
Total inserted nucs M segment
130
Length M segment
5340 (95.5%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • T1C
  • A5T
  • A6C
  • A7C
  • A9G
  • T10A
  • A14G
  • T16A
  • G23T
  • T33C
  • A35G
  • G43C
  • T49C
  • C63G
  • C64T
  • T65C
  • T66C
  • G69A

M segment

  • A1C
  • A2T
  • A3T
  • A5G
  • A6G
  • T8G
  • A9C
  • C10G
  • T11G
  • T25C
  • G46T
  • A47G
  • G52A
  • A53C
  • A66G
  • T67A
  • A71G
  • A76G

S segment

  • T16A
  • C31G
  • T32C
  • G34A
  • A45G
  • C48T
  • A84G
  • A98T
  • A102G
  • C126T
  • C138A
  • T141C
  • C150T
  • T165C
  • T166C
  • A173G
  • C183T
  • A186G
Deletions

S segment

1600, 1666-1709
Insertions

L segment

ins_0:CCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTC, ins_19:TGATTCCCCGTCACCCGTGGTCACAC, ins_58:T, ins_11930:AA, ins_12083:TACTATCCTGCTATTT, ins_12108:TTCATTATTTGCAGGGTGTGGGGGGAACGATTTCTTTTGCGGCTCTAGCCTCTCTCTTTCCGAGCTGCTAGCGCTCCTGCGAACATGGTGAACGTGCCTAAAACCCGCCGGACATTCTGCAAGAAATGTGGGAAGCACCAACCCCACAAGGTGACACAGTACAAGAA

M segment

ins_0:GGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGAT, ins_5165:A

S segment

ins_0:GTAACCATCAACCATGTTTATTTTAACTGCTTATATAATCCTGCTTTATTAACTTCTTCTTATTTCTTTCGTTTTAAACACTTAAAGGGCTGTGCGGCAACGATATCTTAACACGT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:H2Y
  • GPC:I3T
  • GPC:S4P
  • GPC:M6L
  • GPC:Y7C
  • GPC:F10L
  • GPC:C15W
  • GPC:G16S
  • GPC:G18E
  • GPC:K19G
  • GPC:T20S
  • GPC:N21H
  • GPC:P23L
  • GPC:H24S
  • GPC:G26K
  • GPC:E28Q
  • GPC:N30S
  • GPC:H33S

NP

  • NP:Y20F
  • NP:K45R
  • NP:D116E
  • NP:N125G
  • NP:N150H
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:S275N
  • NP:I277V
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:G83D
  • RdRp:G113D
  • RdRp:I114V
  • RdRp:T163A
  • RdRp:E167G
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
Deletions
N/A
Insertions
N/A

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